Ebolavirus Sequence list

Submitted by Andrew Rambaut on Mon, 2014-04-21 14:19

A table of sequences used in the ebolavirus analysis. Thanks to Stephan Günther at the Bernhard Nocht Institute for Tropical Medicine, Hamburg and his co-authors for sending the 2014 sequences ahead of their publication on Genbank. The location and date annotations were not always obvious in the sequence records and have in some cases been inferred from the associated papers but may contain inaccuracies. We have removed sequences that were obviously re-sequencing or lab strains.


accession virus strain location date Pubmed
KC545393 BDBV EboBund-112 Isiro,DRC 2012 23711383
KC545394 BDBV EboBund-120 Isiro,DRC 2012 23711383
KC545395 BDBV EboBund-122 Isiro,DRC 2012 23711383
KC545396 BDBV EboBund-14 Isiro,DRC 2012 23711383
FJ217161 BDBV Bundibugyo Bundibugyo, Uganda 2007-11 19023410
AF272001 EBOV Mayinga Yambuku,DRC 1976 10073695
KC242801 EBOV deRoover DRC 1976 23255795
KC242791 EBOV Bonduni Tandala,DRC 1977 23255795
KC242792 EBOV Gabon Mekouka,Gabon 1994 23255795
AY354458 EBOV Zaire Kikwit,DRC 1995  
KC242796 EBOV 13625Kikwit Kikwit,DRC 1995 23255795
KC242799 EBOV 13709Kikwit Kikwit,DRC 1995 23255795
KC242793 EBOV 1Eko Gabon 1996 23255795
KC242794 EBOV 2Nza Gabon 1996 23255795
KC242795 EBOV 1Mbie Gabon 1996 23255795
KC242797 EBOV 1Oba Gabon 1996 23255795
KC242798 EBOV 1Ikot Gabon 1996 23255795
KC242800 EBOV Ilembe Gabon 2002 23255795
KC242784 EBOV Luebo9 Luebo,DRC 2007 23255795
KC242785 EBOV Luebo0 Luebo,DRC 2007 23255795
KC242786 EBOV Luebo1 Luebo,DRC 2007 23255795
KC242787 EBOV Luebo23 Luebo,DRC 2007 23255795
KC242788 EBOV Luebo43 Luebo,DRC 2007 23255795
KC242789 EBOV Luebo4 Luebo,DRC 2007 23255795
KC242790 EBOV Luebo5 Luebo,DRC 2007 23255795
KJ660346 EBOV Kissidougou-C15 Kissidougou,Guinea 2014 N. Engl. J. Med. (2014) In press
KJ660347 EBOV Gueckedou-C07 Gueckedou,Guinea 2014 N. Engl. J. Med. (2014) In press
KJ660348 EBOV Gueckedou-C05 Gueckedou,Guinea 2014 N. Engl. J. Med. (2014) In press
JQ352763 EBOV Kikwit Kikwit,DRC 1995-05-04  
HQ613403 EBOV M-M DRC 2007-08-31  
HQ613402 EBOV 034-KS DRC 2008-12-31  
AF522874 RESTV Pennsylvania Philippines 1990 12191779
AB050936 RESTV Reston Philippines 1996  
JX477166 RESTV Alice, TX USA MkCQ8167 Philippines 1996 23255795
FJ621583 RESTV Reston08-A Philippines 2008 19590002
FJ621584 RESTV Reston08-C Philippines 2008 19590002
FJ621585 RESTV Reston08-E Philippines 2008 19590002
JX477165 RESTV Reston09-A Philippines 2009 23255795
KC242783 SUDV Maleo Maleo,Sudan 1979 23255795
AY729654 SUDV Gulu Gulu,Uganda 2000  
EU338380 SUDV Yambio Yambio,South Sudan 2004  
FJ968794 SUDV Boniface Sudan 1976  
KC545389 SUDV EboSud-602 Kibaale,Uganda 2012 23711383
KC545390 SUDV EboSud-603 Kibaale,Uganda 2012 23711383
KC545391 SUDV EboSud-609 Kibaale,Uganda 2012 23711383
KC545392 SUDV EboSud-682 Kibaale,Uganda 2012 23711383
KC589025 SUDV EboSud-639 Luwero,Uganda 2012 23711383
JN638998 SUDV Nakisamata Nakisimata,Uganda 2011-05 22931687
FJ217162 TAFV Cote_dIvoire Tai Forest,Ivory Coast 1994-11 19023410

 

 

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